Front matter
1-11
Speeding Up the DIALIGN Multiple Alignment Program by Using the ‘Greedy Alignment of BIOlogical Sequences LIBrary’ (GABIOS-LIB)
Saïd Abdeddaïm and Burkhard Morgenstern
12-23
GeMCore, a Knowledge Base Dedicated to Mapping Mammalian Genomes
Gisèle Bronner, Bruno Spataro, Christian Gautier and François Rechenmann
24-31
Optimal Agreement Supertrees
David Bryant
32-44
Segmentation by Maximal Predictive Partitioning According to Composition Biases
Laurent Guéguen
45-56
Can We Have Confidence in a Tree Representation?
Alain Guénoche and Henri Garreta
57-73
Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition
Vsevolod Makeev, Vasily Ramensky, Mikhail Gelfand, Mikhail Roytberg and Vladimir Tumanyan
74-83
Exact and Asymptotic Distribution of the Local Score of One i.i.d. Random Sequence
Sabine Mercier, Dominique Cellier, François Charlot and Jean-Jacques Daudin
84-98
Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees
Vincent Ranwez and Olivier Gascuel
99-110
Computational Complexity of Word Counting
Mireille Régnier
111-125
Eugène: An Eukaryotic Gene Finder That Combines Several Sources of Evidence
Thomas Schiex, Annick Moisan and Pierre Rouzé
126-134
Tree Reconstruction via a Closure Operation on Partial Splits
Charles Semple and Mike Steel
135-146
InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans
Nicolas Thierry-Mieg and Laurent Trilling
147-163
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data
Jacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder and Shoshana Wodak
Back matter