The outer stem tissues of conifers provide a durable constitutive and inducible defense barrier consisting of suberized or
lignified periderm, sclereids, a network of terpenoid-filled resin ducts, and phenolic phloem parenchyma cells. Microarray
gene expression profiling of Sitka spruce (
Picea sitchensis) bark attacked by stem-boring weevils (
Pissodes strobi) or through mechanical wounding demonstrated significant accumulation of transcripts resembling dirigent protein (DIR) genes.
To investigate this gene family and its spatial and temporal patterns of expression in conifer defense, we isolated cDNAs
representing 19 unique DIR and DIR-like genes from Sitka spruce, white spruce (
P. glauca), and interior spruce (
P. glauca ×
engelmannii). Sequence alignments also identified a large number of DIR-like proteins in other plant species, which share several conserved
protein motifs with known DIR proteins. Phylogenetic analysis of 72 DIR and DIR-like proteins suggests five distinct subfamilies,
DIR-a and four DIR-like subfamilies (DIR-b, DIR-c, DIR-d and DIR-e). Previously characterized members of the DIR-a subfamily
direct stereoselective phenolic coupling reactions in the formation of lignans and possibly lignins. The spruce genes identified
here are members of the DIR-a and DIR-b subfamilies. Using gene-specific quantitative real-time PCR we measured constitutive
expression for six DIR-a genes and three DIR-like genes in different stem tissues, green shoot tips, and roots of Sitka spruce.
DIR-like genes revealed ubiquitous high expression in all tissues. In contrast, the six DIR-a genes showed a gradient of transcript
abundance in stem tissues with highest levels in the outer cortex and lowest levels in the inner xylem. Gene-specific transcript
profiling of six DIR-a genes confirmed rapid and strong accumulation (up to 500-fold) in wound- and weevil-induced stem bark
and xylem. These findings suggest a role for spruce DIR genes in constitutive and induced phenolic defense mechanisms against
stem-boring insects.
Keywords conifer genomics - gymnosperm - lignan and lignin formation -
Pissodes strobi
- plant herbivore defense - plant–insect interactions
Steven Ralph, Ji-Young Park: These authors contributed equally to the research and deserve recognition as joint first authors