The link between climate-driven river runoff and sole fishery yields observed in the Gulf of Lions (NW Mediterranean) was analysed using carbon- and nitrogen stable isotopes along the flatfish food webs. Off the Rhone River, the main terrestrial (river POM) and marine (seawater POM) sources of carbon differed in ¹³C (–26.11 and –22.36, respectively). Surface sediment and suspended POM in plume water exhibited low ¹³C (–24.38 and –24.70, respectively) that differed more from the seawater POM than from river POM, demonstrating the dominance of terrestrial material in those carbon pools. Benthic invertebrates showed a wide range in ¹⁵N (mean 4.30 to 9.77) and ¹³C (mean –23.81 to –18.47), suggesting different trophic levels, diets and organic sources. Among the macroinvertebrates, the surface (mean ¹³C –23.71) and subsurface (mean ¹³C –23.81) deposit-feeding polychaetes were particularly ¹³C depleted, indicating that their carbon was mainly derived from terrestrial material. In flatfish, ¹⁵N (mean 9.42 to 10.93) and ¹³C (mean –19.95 to –17.69) varied among species, indicating differences in food source and terrestrial POM use. A significant negative correlation was observed between the percentage by weight of polychaetes in the diet and the ¹³C of flatfish white muscle. Solea solea (the main polychaete feeder) had the lowest mean ¹³C, Arnoglossus laterna and Buglossidium luteum (crustacean, mollusc and polychaete feeders) had intermediate values, and Solea impar (mollusc feeder) and Citharus linguatula (crustacean and fish feeder) exhibited the highest ¹³C. Two different benthic food webs were thus identified off the Rhone River, one based on marine planktonic carbon and the other on the terrestrial POM carried by the river. Deposit-feeding polychaetes were responsible for the main transfer of terrestrial POM to upper trophic levels, linking sole population dynamics to river runoff fluctuations.