Front matter
1-13
An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification
Thomas Hinze, Uwe Hatnik and Monika Sturm
14-22
Towards Optimization of PCR Protocol in DNA Computing
Satoshi Kashiwamura, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba and Azuma Ohuchi
23-32
DNASequenceGenerator: A Program for the Construction of DNA Sequences
Udo Feldkamp, Sam Saghafi, Wolfgang Banzhaf and Hilmar Rauhe
33-45
DNA Computing in Microreactors
Danny van Noort, Frank-Ulrich Gast and John S. McCaskill
46-56
Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules
Robert Penchovsky and John S. McCaskill
57-69
Coding Properties of DNA Languages
Salah Hussini, Lila Kari and Stavros Konstantinidis
70-81
Boundary Components of Thickened Graphs
Nataša Jonoska and Masahico Saito
82-91
Population Computation and Majority Inference in Test Tube
Yasubumi Sakakibara
92-103
DNA Starts to Learn Poker
David Harlan Wood, Hong Bi, Steven O. Kimbrough, Dong-Jun Wu and Junghuei Chen
104-116
PNA-mediated Whiplash PCR
John A. Rose, Russell J. Deaton, Masami Hagiya and Akira Suyama
117-128
Biomolecular Computation in Virtual Test Tubes
Max H. Garzon and Chris Oehmen
129-137
Developing Support System for Sequence Design in DNA Computing
Fumiaki Tanaka, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba and Azuma Ohuchi1
138-149
The Fidelity of the Tag-Antitag System
John A. Rose, Russell J. Deaton, Masami Hagiya and Akira Suyama
150-160
PUNCH: An Evolutionary Algorithm for Optimizing Bit Set Selection
Adam J. Ruben, Stephen J. Freeland and Laura F. Landweber
161-171
Solving Knapsack Problems in a Sticker Based Model
Mario J. Pérez-Jiménez and Fernando Sancho-Caparrini
172-181
A Clause String DNA Algorithm for SAT
Vincenzo Manca and Claudio Zandron
182-190
A Proposal of DNA Computing on Beads with Application to SAT Problems
Takenaka Yoichi and Hashimoto Akihiro
191-202
Aqueous Solutions of Algorithmic Problems: Emphasizing Knights on a 3 × 3
Tom Head, Xia Chen, Matthew J. Nichols, Masayuki Yamamura and Susannah Gal
203-212
Solutions of Shortest Path Problems by Concentration Control
Masahito Yamamoto, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe and Azuma Ohuchi
213-222
Another Realization of Aqueous Computing with Peptide Nucleic Acid
Masayuki Yamamura, Yusuke Hiroto and Taku Matoba
223-230
Experimental Confirmation of the Basic Principles of Length-only Discrimination
Yevgenia Khodor, Julia Khodor and Thomas F. Knight
231-247
Experimental Construction of Very Large Scale DNA Databases with Associative Search Capability
John H. Reif, Thomas H. LaBean, Michael Pirrung, Vipul S. Rana and Bo Guo, et al.
248-257
Operation of a Purified DNA Nanoactuator
Friedrich C. Simmel and Bernard Yurke
258-268
DNA Scissors
James C. Mitchell and Bernard Yurke
269-278
A Realization of Information Gate by Using Enterococcus faecalis Pheromone System
Kenichi Wakabayashi and Masayuki Yamamura
279-289
Patterns of Micronuclear Genes in Ciliates
Andrzej Ehrenfeucht, Tero Harju, Ion Petre and Grzegorz Rozenberg
290-299
Peptide Computing - Universality and Complexity
M. Sakthi Balan, Kamala Krithivasan and Y. Sivasubramanyam
300-307
Programmed Mutagenesis Is a Universal Model of Computation
Julia Khodor and David K. Gifford
308-320
Horn Clause Computation by Self-assembly of DNA Molecules
Hiroki Uejima, Masami Hagiya and Satoshi Kobayashi
321-328
DNA-based Parallel Computation of Simple Arithmetic
Hubert Hug and Rainer Schuler
329-339
On P Systems with Global Rules
Andrei Păun
340-349
Computing with Membranes: Variants with an Enhanced Membrane Handling
Maurice Margenstern, Carlos Martín-Vide and Gheorghe Păun
350-359
Towards an Electronic Implementation of Membrane Computing: A Formal Description of Non-deterministic Evolution in Transition P Systems
Angel V. Baranda, Fernando Arroyo, Juan Castellanos and Rafael Gonzalo
360-370
Insertion-Deletion P Systems
Shankara Narayanan Krishna and Raghavan Rama
371-380
A Universal Time-Varying Distributed H System of Degree 1
Maurice Margenstern and Yurii Rogozhin
381-390
A Note on Graph Splicing Languages
N. Gnanamalar David, K. G. Subramanian and D. Gnanaraj Thomas
Back matter