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Book Chapter
Optimal Agreement Supertrees
Book Series
Lecture Notes in Computer Science
Publisher
Springer Berlin / Heidelberg
ISSN
0302-9743 (Print) 1611-3349 (Online)
Volume
Volume 2066/2001
Book
Computational Biology
DOI
10.1007/3-540-45727-5
Copyright
2001
ISBN
978-3-540-42242-6
DOI
10.1007/3-540-45727-5_3
Pages
24-31
Subject Collection
Computer Science
SpringerLink Date
Monday, January 01, 2001
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Optimal Agreement Supertrees
David Bryant
Abstract
An
agreement supertree
of a collection of unrooted phylogenetic trees
T
1
,
T
2
,...,
T
k
with leaf sets
is an unrooted tree
T
with leaf set
such that each tree
T
i
is an induced subtree of
T
. In some cases, there may be no possible agreement supertrees of a set of trees, in other cases there may be exponentially many. We present polynomial time algorithms for computing an optimal agreement supertree, if one exists, of a bounded number of binary trees. The criteria of optimality can be one of four standard phylogenetic criteria: binary character compatibility; maximum summed quartet weight; ordinary least squares; and minimum evolution. The techniques can be used to search an exponentially large number of trees in polynomial time.
David
Bryant
Email:
bryant@lirmm.fr
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