Welcome!
To use the personalized features of this site, please log in or register.
If you have forgotten your username or password, we can help.
My Menu
Saved Items

Optimal Agreement Supertrees

David Bryant Contact Information

Abstract
An agreement supertree of a collection of unrooted phylogenetic trees T 1, T 2,...,T k with leaf sets $$
\mathcal{L}\left( {T_1 } \right),\mathcal{L}\left( {T_2 } \right),...,\mathcal{L}\left( {T_k } \right)
$$ is an unrooted tree T with leaf set $$
\mathcal{L}\left( {T_1 } \right) \cup ... \cup \mathcal{L}\left( {T_k } \right)
$$ such that each tree T i is an induced subtree of T. In some cases, there may be no possible agreement supertrees of a set of trees, in other cases there may be exponentially many. We present polynomial time algorithms for computing an optimal agreement supertree, if one exists, of a bounded number of binary trees. The criteria of optimality can be one of four standard phylogenetic criteria: binary character compatibility; maximum summed quartet weight; ordinary least squares; and minimum evolution. The techniques can be used to search an exponentially large number of trees in polynomial time.

Contact Information David Bryant
Email: bryant@lirmm.fr
Fulltext Preview (Small, Large)
Image of the first page of the fulltext

References secured to subscribers.



Export this chapter
Export this chapter as RIS | Text
 
Remote Address: 38.107.191.107 • Server: mpweb18
HTTP User Agent: CCBot/1.0 (+http://www.commoncrawl.org/bot.html)