Front matter
1-16
An Ontology-Driven Framework for Data Transformation in Scientific Workflows
Shawn Bowers and Bertram Ludäscher
17-30
PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web
Alexander Kozlenkov and Michael Schroeder
31-46
Process Based Data Logistics: a Solution for Clinical Integration Problems
Stefan Jablonski, Rainer Lay, Christian Meiler and Sascha Müller
47-62
Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework
Barbara Heller, Heinrich Herre and Kristin Lippoldt
63-78
A Universal Character Model and Ontology of Defined Terms for Taxonomic Description
Trevor Paterson, Jessie B. Kennedy, Martin R. Pullan, Alan Cannon and Kate Armstrong, et al.
79-94
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology
Barry Smith, Jacob Köhler and Anand Kumar
95-109
Index-Driven XML Data Integration to Support Functional Genomics
Ela Hunt, Evangelos Pafilis, Inga Tulloch and John Wilson
110-123
Heterogeneous Data Integration with the Consensus Clustering Formalism
Vladimir Filkov and Steven Skiena
124-139
LinkSuiteTM: Formally Robust Ontology-Based Data and Information Integration
Werner Ceusters, Barry Smith and James Matthew Fielding
140-155
BioDataServer: an Applied Molecular Biological Data Integration Service
Sören Balko, Matthias Lange, Roland Schnee and Uwe Scholz
156-171
Columba: Multidimensional Data Integration of Protein Annotations
Kristian Rother, Heiko Müller, Silke Trissl, Ina Koch and Thomas Steinke, et al.
172-186
On the Integration of a Large Number of Life Science Web Databases
Zina Ben Miled, Nianhua Li, Yang Liu, Yue He and Eric Lynch, et al.
187-202
Efficient Techniques to Explore and Rank Paths in Life Science Data Sources
Zoé Lacroix, Louiqa Raschid and Maria-Esther Vidal
203-211
Links and Paths through Life Sciences Data Sources
Zoé Lacroix, Hyma Murthy, Felix Naumann and Louiqa Raschid
212-219
Pathway and Protein Interaction Data: from XML to FDM Database
Graham J. L. Kemp and Selpi Selpi
Back matter