A 10-year-old boy, issue of unrelated parents presented with visual impairment, short stature and mental retardation. The presence of a Peters’ anomaly, mental retardation, disproportionate short stature, skeletal abnormalities and distinctive facial features (broad forehead, telecanthus, cupid bow shaped upper lip) established the diagnosis of Peters’ plus syndrome. Analysis of his genomic DNA revealed a homozygous deletion in the β1,3-galactosyltransferase-like gene (B3GALTL), a recently identified gene.