251-256

Teaching High-Performance Computing on a High-Performance Cluster

343-463

Teaching High Performance Computing Parallelizing a Real Computational Science Application

1-5

Introducing Design Patterns, Graphical User Interfaces and Threads Within the Context of a High Performance Computing Application

67-96

High Performance Computing Education for Students in Computational Engineering

37-54

Integrating Teaching and Research in HPC: Experiences and Opportunities

455-485

Education and Research Challenges in Parallel Computing

52-59

Academic Challenges in Large-Scale Multiphysics Simulations

203-266

Balancing Computational Science and Computer Science Research on a Terascale Computing Facility

129-146

Computational Options for Bioinformatics Research in Evolutionary Biology

67-115

Financial Computations on Clusters Using Web Services

84-90

“Plug-and-Play” Cluster Computing HPC Designed for the Mainstream Scientist

97-158

Building an HPC Watering Hole for Boulder Area Computational Science

167-179

The Dartmouth Green Grid

43-90

Resource-Aware Parallel Adaptive Computation for Clusters

7-36

New Algorithms for Performance Trace Analysis Based on Compressed Complete Call Graphs

37-116

PARADIS: Analysis of Transaction-Based Applications in Distributed Environments

175-203

Automatic Tuning of Data Distribution Using Factoring in Master/Worker Applications

3-18

DynTG: A Tool for Interactive, Dynamic Instrumentation

47-67

Rapid Development of Application-Specific Network Performance Tests

79-95

Providing Interoperability for Java-Oriented Monitoring Tools with JINEXT

79-83

RDVIS: A Tool that Visualizes the Causes of Low Locality and Hints Program Optimizations

531-559

CacheIn: A Toolset for Comprehensive Cache Inspection

182-190

Optimization-Oriented Visualization of Cache Access Behavior

151-165

Collecting and Exploiting Cache-Reuse Metrics

87-127

Modelling and Animating Hand Wrinkles

465-468

Simulating Wrinkles in Facial Expressions on an Anatomy-Based Face

281-300

A Multiresolutional Approach for Facial Motion Retargetting Using Subdivision Wavelets

224-231

New 3D Graphics Rendering Engine Architecture for Direct Tessellation of Spline Surfaces

257-270

Fast Water Animation Using the Wave Equation with Damping

147-162

A Comparative Study of Acceleration Techniques for Geometric Visualization

155-174

Building Chinese Ancient Architectures in Seconds

129-150

Accelerated 2D Image Processing on GPUs

301-312

Consistent Spherical Parameterization

75-95

Mesh Smoothing via Adaptive Bilateral Filtering

879-896

Towards a Bayesian Approach to Robust Finding Correspondences in Multiple View Geometry Environments

187-221

Managing Deformable Objects in Cluster Rendering

95-104

Revolute Quadric Decomposition of Canal Surfaces and Its Applications

33-45

Adaptive Surface Modeling Using a Quadtree of Quadratic Finite Elements

47-84

MC Slicing for Volume Rendering Applications

871-878

Modelling and Sampling Ramified Objects with Substructure-Based Method

605-630

Integration of Multiple Segmentation Based Environment Models

313-328

On the Impulse Method for Cloth Animation

63-77

Remeshing Triangle Meshes with Boundaries

3-15

SACARI: An Immersive Remote Driving Interface for Autonomous Vehicles

17-77

A 3D Model Retrieval Method Using 2D Freehand Sketches

653-659

A 3D User Interface for Visualizing Neuron Location in Invertebrate Ganglia

831-844

The Dynamics of General Fuzzy Cellular Automata

360-367

A Cellular Automaton SIS Epidemiological Model with Spatially Clustered Recoveries

368-372

Simulating Market Dynamics with CD++

145-201

A Model of Virus Spreading Using Cell-DEVS

99-132

A Cellular Automata Model of Competition in Technology Markets with Network Externalities

339-356

Self-organizing Dynamics for Optimization

229-237

Constructibility of Signal-Crossing Solutions in von Neumann 29-State Cellular Automata

25-65

Evolutionary Discovery of Arbitrary Self-replicating Structures

285-324

Modelling Ant Brood Tending Behavior with Cellular Automata

17-36

A Realistic Cellular Automata Model to Simulate Traffic Flow at Urban Roundabouts

743-760

Probing the Eddies of Dancing Emergence: Complexity and Abstract Painting

436-443

Enhanced TCP with End-to-End Bandwidth and Loss Differentiation Estimate over Heterogeneous Networks

257-283

Content-Aware Automatic QoS Provisioning for UpnP AV-Based Multimedia Services over Wireless LANs

19-31

Simulation Framework for Wireless Internet Access Networks

1-3

WDM: An Energy-Efficient Multi-hop Routing Algorithm for Wireless Sensor Networks

309-325

Forwarding Scheme Extension for Fast and Secure Handoff in Hierarchical MIPv6

1-8

Back-Up Chord: Chord Ring Recovery Protocol for P2P File Sharing over MANETs

485-492

PATM: Priority-Based Adaptive Topology Management for Efficient Routing in Ad Hoc Networks

617-649

Practical and Provably-Secure Multicasting over High-Delay Networks

223-229

A Novel IDS Agent Distributing Protocol for MANETs

487-506

ID-Based Secure Session Key Exchange Scheme to Reduce Registration Delay with AAA in Mobile IP Networks

519-526

An Efficient Wireless Resource Allocation Based on a Data Compressor Predictor

155-162

A Seamless Handover Mechanism for IEEE 802.16e Broadband Wireless Access

183-203

Fault Tolerant Coverage Model for Sensor Networks

763-791

Detection Algorithms Based on Chip-Level Processing for DS/CDMA Code Acquisition in Fast Fading Channels

13-26

Clustering-Based Distributed Precomputation for Quality-of-Service Routing

559-567

Traffic Grooming Algorithm Using Shortest EDPs Table in WDM Mesh Networks

126-189

Efficient Indexing of Moving Objects Using Time-Based Partitioning with R-Tree

181-203

Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments

27-64

A Power Efficient Routing Protocol in Wireless Sensor Networks

27-45

Applying Mobile Agent to Intrusion Response for Ad Hoc Networks

601-609

A Vertical Handoff Decision Process and Algorithm Based on Context Information in CDMA-WLAN Interworking

661-712

Dynamic Data Driven Applications Systems: New Capabilities for Application Simulations and Measurements

159-163

Dynamic Data Driven Methodologies for Multiphysics System Modeling and Simulation

87-124

Towards Dynamically Adaptive Weather Analysis and Forecasting in LEAD

197-227

Towards a Dynamic Data Driven Application System for Wildfire Simulation

303-309

Multiscale Interpolation, Backward in Time Error Analysis for Data-Driven Contaminant Simulation

715-744

Ensemble–Based Data Assimilation for Atmospheric Chemical Transport Models

367-393

Towards Dynamic Data-Driven Optimization of Oil Well Placement

1-23

High-Fidelity Simulation of Large-Scale Structures

551-615

A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery

680-688

Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug Design

15-36

Simulation and Visualization of Air Flow Around Bat Wings During Flight

695-702

Integrating Fire, Structure and Agent Models

61-100

A Dynamic, Data-Driven, Decision Support System for Emergency Medical Services

271-307

Dynamic Data Driven Coupling of Continuous and Discrete Methods for 3D Tracking

163-168

Semi-automated Simulation Transformation for DDDAS

43-103

The Development of Dependable and Survivable Grids

169-179

On the Fundamental Tautology of Validating Data-Driven Models and Simulations

395-415

Managing Heterogeneity in a Grid Parallel Haskell

561-603

An Efficient Equi-semi-join Algorithm for Distributed Architectures

764-771

Two Fundamental Concepts in Skeletal Parallel Programming

109-117

A Formal Framework for Orthogonal Data and Control Parallelism Handling

1-13

Empirical Parallel Performance Prediction from Semantics-Based Profiling

595-604

Dynamic Memory Management in the Loci Framework

227-256

On Adaptive Mesh Refinement for Atmospheric Pollution Models

445-473

Total Energy Singular Vectors for Atmospheric Chemical Transport Models

211-252

Application of Static Adaptive Grid Techniques for Regional-Urban Multiscale Air Quality Modeling

487-549

On the Accuracy of High-Order Finite Elements in Curvilinear Coordinates

7-13

Analysis of Discrete Adjoints for Upwind Numerical Schemes

177-183

The Impact of Background Error on Incomplete Observations for 4D-Var Data Assimilation with the FSU GSM

33-70

Disjoint Segments with Maximum Density

851-859

Wiener Indices of Balanced Binary Trees

165-181

What Makes the Arc-Preserving Subsequence Problem Hard?

869-876

An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction

181-194

Performance Evaluation of Protein Sequence Clustering Tools

417-444

A Data-Adaptive Approach to cDNA Microarray Image Enhancement

894-902

String Kernels of Imperfect Matches for Off-target Detection in RNA Interference

125-166

A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular Localization

225-230

Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides

915-939

Phylogenetic Networks, Trees, and Clusters

491-530

SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors

205-227

Simultaneous Alignment and Structure Prediction of RNAs

811-829

Clustering Using Adaptive Self-organizing Maps (ASOM) and Applications

321-349

Experimental Analysis of a New Algorithm for Partial Haplotype Completion

25-38

Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures

968-975

Profiling and Searching for RNA Pseudoknot Structures in Genomes

745-761

Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information Extraction

243-249

k-Recombination Haplotype Inference in Pedigrees

101-108

Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays

119-135

A Parallel Implementation for Determining Genomic Distances Under Deletion and Insertion

125-162

Phasing and Missing Data Recovery in Family Trios

29-58

Highly Scalable Algorithms for Robust String Barcoding

1-6

Optimal Group Testing Strktegies with Interval Queries and Their Application to Splice Site Detection

793-809

Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray Datasets

279-283

Bulk Synchronous Parallel ML: Modular Implementation and Performance Prediction

153-179

Fast Expression Templates

357-393

Solving Coupled Geoscience Problems on High Performance Computing Platforms

39-48

H2O Metacomputing – Jini Lookup and Discovery

3-45

User Experiences with Nuclear Physics Calculations on a H2O Metacomputing System and on the BEgrid