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João Carlos Setubal and Sergio Verjovski-Almeida
Front matter
1-8
Differential Gene Expression in the Auditory System
9-10
Searching for Non-coding RNA
11-27
Cyberinfrastructure for PathoSystems Biology
28-29
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites
30-41
Perturbing Thermodynamically Unfeasible Metabolic Networks
42-53
Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees
54-64
Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data
65-76
Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data
77-84
Machine Learning Techniques for Predicting Bacillus subtilis Promoters
85-94
An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters
95-106
Modeling and Property Verification of Lactose Operon Regulation
107-117
YAMONES: A Computational Architecture for Molecular Network Simulation
118-127
Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis
128-140
Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction
141-152
Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms
153-159
Diet as a Pressure on the Amino Acid Content of Proteomes
160-169
A Method for Comparing Three Genomes
170-180
Comparison of Genomic DNA to cDNA Alignment Methods
181-189
Segmentation and Centromere Locating Methods Applied to Fish Chromosomes Images
190-193
Sequence Motif Identification and Protein Family Classification Using Probabilistic Trees
194-197
Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2 from Primary Sequence Analysis
198-201
Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project
202-205
SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers
206-209
New EST Trimming Strategy
210-213
A Modification of the Landau-Vishkin Algorithm Computing Longest Common Extensions via Suffix Arrays
214-217
The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment
218-221
Analysis of Structure Prediction Tools in Mutated MeCP-2
222-225
Protein Loop Classification Using Artificial Neural Networks
226-229
VIZ – A Graphical Open-Source Architecture for Use in Structural Bioinformatics
230-233
Selection of Data Sets of Motifs as Attributes in the Process of Automating the Annotation of Proteins’ Keywords
234-237
Bioinformatics Tools for HIV-1 Identification in Southern Brazilian States
238-241
Fact and Task Oriented System for Genome Assembly and Annotation
242-245
A Clustering Strategy to Find Similarities in Mycoplasma Promoters
246-250
Gene Prediction by Syntenic Alignment
251-256
Real Time Immersive Visualization and Manipulation of the Visible Human Data Set
Back matter
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