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Trey Ideker and Vineet Bafna
Front matter
1-13
Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation
14-28
Probabilistic Paths for Protein Complex Inference
29-41
Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting
42-56
A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells
57-76
Identification and Evaluation of Functional Modules in Gene Co-expression Networks
77-95
A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion Inhibitor HMF for Ethanologenic Yeast
96-107
A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry
108-118
De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis
119-129
Alignment of Mass Spectrometry Data by Clique Finding and Optimization
Back matter
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