Public health surveillance of emerging infectious diseases is an essential instrument in the attempt to control and prevent
their spread. This paper presents the R package “surveillance”, which contains functionality to visualise routinely collected
surveillance data and provides algorithms for the statistical detection of aberrations in such univariate or multivariate
time series. For evaluation purposes, the package includes real-world example data and the possibility to generate surveillance
data by simulation. To compare algorithms, benchmark numbers like sensitivity, specificity, and detection delay can be computed
for a set of time series. Package motivation, use and potential are illustrated through a mixture of surveillance theory,
case study and R code snippets.
Keywords Monitoring - Public health surveillance - Time series of counts - Outbreak detection - Univariate and multivariate surveillance