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Genetic Algorithms for Gene Expression Analysis

Ed Keedwell14 Contact Information and Ajit Narayanan14 Contact Information

(14)  School of Engineering and Computer Science, University of Exeter, EX4 4QF Exeter
Abstract
The major problem for current gene expression analysis techniques is how to identify the handful of genes which contribute to a disease from the thousands of genes measured on gene chips (microarrays). The use of a novel neural-genetic hybrid algorithm for gene expression analysis is described here. The genetic algorithm identifies possible gene combinations for classification and then uses the output from a neural network to determine the fitness of these combinations. Normal mutation and crossover operations are used to find increasingly fit combinations. Experiments on artificial and real-world gene expression databases are reported. The results from the algorithm are also explored for biological plausibility and confirm that the algorithm is a powerful alternative to standard data mining techniques in this domain.

Contact Information Ed Keedwell
Email: E.C.Keedwell@ex.ac.uk

Contact Information Ajit Narayanan
Email: A.Narayanan@ex.ac.uk
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Referenced by
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  1. Keedwell, E. (2005) Discovering Gene Networks with a Neural-Genetic Hybrid. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2(3)
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