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Book Chapter
Genetic Algorithms for Gene Expression Analysis
Book Series
Lecture Notes in Computer Science
Publisher
Springer Berlin / Heidelberg
ISSN
0302-9743 (Print) 1611-3349 (Online)
Volume
Volume 2611/2003
Book
Applications of Evolutionary Computing
DOI
10.1007/3-540-36605-9
Copyright
2003
ISBN
978-3-540-00976-4
DOI
10.1007/3-540-36605-9_8
Pages
191-192
Subject Collection
Computer Science
SpringerLink Date
Wednesday, January 01, 2003
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Genetic Algorithms for Gene Expression Analysis
Ed Keedwell
14
and Ajit Narayanan
14
(14)
School of Engineering and Computer Science, University of Exeter, EX4 4QF Exeter
Abstract
The major problem for current gene expression analysis techniques is how to identify the handful of genes which contribute to a disease from the thousands of genes measured on gene chips (microarrays). The use of a novel neural-genetic hybrid algorithm for gene expression analysis is described here. The genetic algorithm identifies possible gene combinations for classification and then uses the output from a neural network to determine the fitness of these combinations. Normal mutation and crossover operations are used to find increasingly fit combinations. Experiments on artificial and real-world gene expression databases are reported. The results from the algorithm are also explored for biological plausibility and confirm that the algorithm is a powerful alternative to standard data mining techniques in this domain.
Ed
Keedwell
Email:
E.C.Keedwell@ex.ac.uk
Ajit
Narayanan
Email:
A.Narayanan@ex.ac.uk
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Referenced by
1 newer article
Keedwell, E. (2005) Discovering Gene Networks with a Neural-Genetic Hybrid.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
2(3)
[CrossRef]
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