The concentrations of polar organic compounds including n-alkanoic acids, n-alkanols, steroids and triterpenoids were determined in extracts of shallow sediments from the Mesopotamian marshlands of Iraq. The sediments were collected by a stainless steel sediment corer, extracted with a dichloromethane and methanol mixture (3:1 v:v) by ultrasonic agitation and then analyzed by gas chromatography–mass spectrometric (GC–MS). The analysis results showed that the n-alkanoic acids ranged from C₈ to C₂₀ with concentrations of 7.8 ± 1.2 μg/g sample, whereas the concentrations of n-alkanols, which ranged from C₁₂ to C₃₉ were from 28.6 ± 4.3 to 121.7 ± 18.3 μg/g sample. The steroids and triterpenoids included stenols, stanols, stenones, stanones, tetrahymanol, tetrahymanone and extended ββ-hopanes. The total concentrations of steroids and triterpenoids ranged from 26.8 ± 4.1 to 174.6 ± 26.2 μg/g and from 0.74 ± 0.11 to 11.2 ± 1.7 μg/g sample, respectively. The major sources of these lipids were from natural vegetation, microbial (plankton) residues and bacteria in the sediments, with some contribution from anthropogenic sources (livestock, sewage and petroleum). Further studies of these wetlands are needed to characterize the input rate, transformation and diagenesis of the organic matter and to assess its various sources.