Welcome!
To use the personalized features of this site, please log in or register.
If you have forgotten your username or password, we can help.
|
 |
When Activators Repress and Repressors Activate: A Qualitative Analysis of the Shea–Ackers Model
| |
|
Original Article
When Activators Repress and Repressors Activate: A Qualitative Analysis of the Shea–Ackers Model
Tomáš Gedeon1, 2, Konstantin Mischaikow3, 4, Kate Patterson1 and Eliane Traldi4
| (1) |
Department of Mathematics, Montana State University, Bozeman, MT 59715, USA |
| (2) |
Center for Computational Biology, Montana State University, Bozeman, MT 59715, USA |
| (3) |
Department of Mathematics, Rutgers, The State University of New Jersey, 110 Frelinghuysen Rd, Piscataway, NJ 08854-8019, USA |
| (4) |
BioMaPS Institute, Rutgers, The State University of New Jersey, 110 Frelinghuysen Rd, Piscataway, NJ 08854-8019, USA |
Received: 28 November 2007 Accepted: 12 February 2008 Published online: 22 July 2008
Abstract The concept of activation in transcriptional regulation is based on the assumption that product mRNA increases monotonically
as a function of regulator concentration. We analyze the Shea–Ackers model of transcription and find this assumption to be
correct only for the simplest of promoters. We define a new regulatory constant that is a nonlinear combination of association
and transcription initiation constants characterizing activation and repression for more complicated promoters. Our results
can guide the synthesis of new promoters and lead to a deeper understanding of the constraints guiding the natural promoters
evolution.
Keywords Mass action kinetics - Prokaryotic transcription - Activator - Repressor
 References secured to subscribers.
|
|
|
|
|
|