We describe techniques for identifying functional promoter elements in the 5′-flanking region of the murine cyclic nucleotide
phosphodiesterase 3B (mPDE3B) gene. The 5′-flanking region of the mPDE3B gene was cloned and sequenced, and putative transcription
factor binding sites were identified with computational tools. A series of reporter plasmids containing the luciferase gene
fused to different fragments of the 5′-flanking region of the mPDE3B gene was constructed and used to transfect 3T3-L1 fibroblasts
or differentiating adipocytes. Reporter gene assays showed that there are two promoter regions in the 5′-flanking region in
the mPDE3B gene: a distal region located approx 4 kb upstream of the translation initiation site that contains cAMP-response
element (CRE) cis-acting elements, and a proximal region that is GC rich and lacks TATA sequences. The distal promoter region induced much
higher luciferase activity than did the proximal one. Mutation of the CRE sequences or reversal of the orientation of the
CRE-containing region abolished promoter activity of the distal region. Electrophoretic mobility shift assay analysis indicated
that binding to CRE elements was greater in nuclear extracts from differentiating adipocytes than from fibroblasts. Mapping
of transcription initiation sites suggested that the distal promoter region might function as an enhancer, whereas the proximal
promoter drives transcription of the mPDE3B gene.
Key Words Phosphodiesterase 3B – DNA sequencing – promoter – reverse transcriptase-polymerase chain reaction – mutation – electrophoretic mobility shift assay – transcription initiation