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Modeling, Learning and Simulating Biological Cells with Entity Grammar
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Modeling, Learning and Simulating Biological Cells with Entity Grammar
Yun Wang1 , Rao Zheng2 and Yan-Jiang Qiao1
| (1) |
Beijing University of Chinese Medicine, Beijing, 100102, China |
| (2) |
Beijing University of Chemical Technology, Beijing, 100029, China |
Abstract
In recent years, whole cell modeling approaches, which combine existing knowledge and machine learning results, have received
considerable attention. These approaches are potentially very efficient for simulating and analyzing physiological function
of cells. In this work, entity grammar system is proposed as formalism for knowledge representation and multistratgy learning
techniques in systems biology. Modeling biological cells with entity grammar starts from the simple grammatical models. Integrating
the simple models into a cooperating entity grammar of cell facilitates real-time model learning and updating. This makes
a difference with many other formalisms to build preset models. The scheme of such a platform is described in the paper and
the possible applications are discussed. The proposed formalism method is open to all reasoning paradigm and can be used for
studying biological complex systems.
Keywords entity grammar system - systems biology - complex system
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