A monomer structure based on a hairpin loop is described that can be linked via short oligonucleotide sequences (linkers)
to form polymers. Independence of linked monomers allow for exponential complexity of the polymer structure. A method is described
wherein the polymer structure can be replicated semi-conservatively with fidelity, given a source of monomer structures and
linkers. Furthermore, the separation of the product from the parent allows for exponential amplification. These steps are
achieved by secondary structure constraints and toehold-mediated strand displacement, and occur in the absence of enzymes.
The parallel polymerization allows for replication to be achieved in O(log
N) time, as opposed to O(
N) from a processive process.
Keywords DNA based polymers - DNA motors - self-replication