Prior to the collection of a series of sediment cores, a high- and very-high-resolution reflection seismic survey was carried out on Lago Puyehue, Lake District, South-Central Chile. The data reveal a complex bathymetry and basin structure, with three sub-basins separated by bathymetric ridges, bedrock islands and interconnected channels. The sedimentary infill reaches a thickness of >200 m. It can be sub-divided into five seismic-stratigraphic units, which are interpreted as: moraine, ice-contact or outwash deposits (Unit I), glacio-lacustrine sediments rapidly deposited in a proglacial or subglacial lake at the onset of deglaciation (Unit II), lacustrine fan deposits fed by sediment-laden meltwater streams in a proglacial lake (Unit III), distal deposits of fluvially derived sediment in an open, post-glacial lake (Unit IV) and authigenic lacustrine sediments, predominantly of biogenic origin, that accumulated in an open, post-glacial lake (Unit V). This facies succession is very similar to that observed in other glacial lakes, and minor differences are attributed to an overall higher depositional energy and higher terrigenous input caused by the strong seismic and volcanic activity in the region combined with heavy precipitation. A long sediment core (PU-II core) penetrates part of Unit V and its base is dated as 17,915 cal. yr. BP. Extrapolation of average sedimentation rates yields an age of ca. 24,750 cal. yr. BP for the base of Unit V, and of ca. 28,000 cal. yr. BP for the base of Unit IV or for the onset of open-water conditions. This is in contrast with previous glacial-history reconstructions based on terrestrial records, which date the complete deglaciation of the basin as ca. 14,600 cal. yr. BP. This discrepancy cannot be easily explained and highlights the need for more lacustrine records from this region.