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Glenn Tesler and Dannie Durand
Front matter
1-15
Multi-break Rearrangements: From Circular to Linear Genomes
16-29
A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes
30-44
Improving Inversion Median Computation Using Commuting Reversals and Cycle Information
45-57
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)
58-68
How to Achieve an Equivalent Simple Permutation in Linear Time
69-82
Baculovirus Phylogeny Based on Genome Rearrangements
83-95
Learning Gene Regulatory Networks via Globally Regularized Risk Minimization
96-109
Evolution of Tandemly Arrayed Genes in Multiple Species
110-121
Selecting Genomes for Reconstruction of Ancestral Genomes
122-135
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications
136-148
Reconstructing an Inversion History in the Anopheles Gambiae Complex
149-161
Recovering True Rearrangement Events on Phylogenetic Trees
162-176
Parts of the Problem of Polyploids in Rearrangement Phylogeny
177-191
A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals
Back matter
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