Sequencing of an 8182-bp chromosomal region in
Pseudomonas stutzeri revealed the major portion of an apparent mixed-function supraoperon (defined as a nested organization of transcriptional
units encoding gene products which function in more than one biochemical pathway). A nearly identical supraoperon organization
was apparent in the unpublished
Pseudomonas aeruginosa genome database, where the complete
Pseudomonas supraoperon was deduced. The
serC(
pdxF)–
aroQ
p·
pheA–
hisH
b–
tyrA
c–
aroF–
cmk–
rpsA supraoperon encodes 3-phosphoserine aminotransferase, a bidomain chorismate mutase/prephenate dehydratase, imidazole acetol-phosphate
aminotransferase, cyclohexadienyl dehydrogenase, 5-enolpyruvylshikimate 3-phosphate synthase, cytidylate kinase, and ribosomal
protein S1. The member genes were identified by homology analysis, enzyme assay, and/or functional complementation. Although
SerC(PdxF) and HisH
b exercise their primary functions in serine, pyridoxine, and histidine biosynthesis, they also have critical catalytic roles
in provision of the sidechain amino groups of tryptophan, phenylalanine, and tyrosine. The likelihood of supraoperon-wide
translational coupling is suggested by the highly compressed intergenic spacing (including overlapping stop and start codons),
as well as by possible hairpin structures in mRNA which may sequester some of the ribosome-binding sites and thus provide
a mechanism for translational coupling. A comparison of the organization of the supraoperon genes in other organisms represented
in the database revealed unmistakable conservation of the linkage of these genes across wide phylogenetic boundaries, albeit
with considerable gene shuffling. At least remnants and shuffled portions of the entire supraoperon are distributed throughout
the Gram-negative bacteria with the
hisH
b–
tyrA–
aroF gene block being conserved as distantly as the gram-positive bacteria. Such conservation of mixed-function genes may reflect
the selective value of still-unknown global relationships of protein–protein interaction or regulation.
Key words: Genomics — Gene organization — Supraoperon —Pseudomonas
Received: 15 September 1998 / Accepted: 18 February 1999