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Sanguthevar Rajasekaran
Front matter
1-13
Association Analysis Techniques for Bioinformatics Problems
14-15
Analyzing and Interrogating Biological Networks (Abstract)
16-17
From Architecture to Function (and Back) in Bio-networks
18-29
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants
30-43
Assembly of Large Genomes from Paired Short Reads
44-51
Amino Acid Classification and Hash Seeds for Homology Search
52-53
Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads
54-66
Gene Networks Viewed through Two Models
67-78
Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper
79-89
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning
90-101
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA
102-113
Comparing Bacterial Genomes by Searching Their Common Intervals
114-125
Generalized Binary Tanglegrams: Algorithms and Applications
126-138
Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data
139-150
Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding
151-163
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets
164-175
Computational Protocol for Screening GPI-anchored Proteins
176-186
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors
187-198
An Agent-Based Model of Solid Tumor Progression
199-210
Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma
211-223
Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach
224-235
Biclustering Expression Data Based on Expanding Localized Substructures
236-247
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction
248-258
Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding
259-269
The Impact of Gene Selection on Imbalanced Microarray Expression Data
270-281
Spatial Information and Boolean Genetic Regulatory Networks
282-294
Modeling of Genetic Regulatory Network in Stochastic π-Calculus
295-306
fMRI Activation Detection by MultiScale Hidden Markov Model
307-319
cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models
320-330
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments
331-342
A Fitness Distance Correlation Measure for Evolutionary Trees
343-352
Alignment and Analysis of Closely Related Genomes
353-361
Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements
362-375
Multiple Sequence Alignment System for Pyrosequencing Reads
376-387
A Bayesian Approach to High-Throughput Biological Model Generation
388-399
Parallel Selection of Informative Genes for Classification
400-408
Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways
409-423
GridSPiM: A Framework for Simple Locality and Containment in the Stochastic π-Calculus
424-436
Mutual Information Based Extrinsic Similarity for Microarray Analysis
437-448
Graph Spectral Approach for Identifying Protein Domains
Back matter
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