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Using Hybrid Concurrent Constraint Programming to Model Dynamic Biological Systems
| Book Series | Lecture Notes in Computer Science |
| Publisher | Springer Berlin / Heidelberg |
| ISSN | 0302-9743 (Print) 1611-3349 (Online) |
| Volume | Volume 2401/2002 |
| Book | Logic Programming |
| DOI | 10.1007/3-540-45619-8 |
| Copyright | 2002 |
| ISBN | 978-3-540-43930-1 |
| DOI | 10.1007/3-540-45619-8_7 |
| Pages | 411-418 |
| Subject Collection | Computer Science |
| SpringerLink Date | Tuesday, January 01, 2002 |
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Using Hybrid Concurrent Constraint Programming to Model Dynamic Biological Systems
Alexander Bockmayr5 and Arnaud Courtois5 
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LORIA, Université Henri Poincaré, B.P. 239, F-54506 Vandœuvre-lès-Nancy, France |
Abstract
Systems biology is a new area in biology that aims at achieving a systems-level understanding of biological systems. While
current genome projects provide a huge amount of data on genes or proteins, lots of research is still necessary to understand
how the different parts of a biological system interact in order to perform complex biological functions. Computational models
that help to analyze, explain or predict the behavior of biological systems play a crucial role in systems biology. The goal
of this paper is to show that hybrid concurrent constraint programming [11] may be a promising alternative to existing modeling approaches in systems biology. Hybrid cc is a declarative compositional
programming language with a well-defined semantics. It allows one to model and simulate the dynamics of hybrid systems, which
exhibit both discrete and continuous change. We show that Hybrid cc can be used naturally to model a variety of biological
phenomena, such as reaching thresholds, kinetics, gene interaction or biological pathways.
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