We investigated variation in the gene encoding the agouti signaling protein (
ASIP) in relation to coat color evolution in primates. We found little evidence that mutations in the coding region of
ASIP have been involved in color changes among closely related primate species. Among many closely related species with differing
coat color, the coding region of
ASIP was identical. In two cases (Sulawesi macaque and black lion tamarin) where species with almost completely black coat color
had derived point mutations in exon 4 of the
ASIP coding sequence, the same mutations did not alter coloration in other mammals and so probably do not affect
ASIP function. Evolutionary reconstructions of two key phenotypes that are typically related to
ASIP function—transverse phaeomelanin bands on hairs and pale ventral coloration—showed that these usually evolved concurrently,
suggesting that loci acting downstream of
ASIP may be involved. Analysis of dN/dS ratios revealed a likely change in functional constraint on
ASIP following loss of agouti-banded hairs + pale ventral coloration, particularly in catarrhine primates (humans, apes, and Old
World monkeys). Together with previous results on a lack of association of coat color with
MC1R variation, these results suggest that other loci probably have an important role in primate coat color evolution.