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1. Trasposition Model

A 1.375-Approximation Algorithm for Sorting by Transpositions

Isaac EliasContact Information and Tzvika HartmanContact Information

(1)  Dept. of Numerical Analysis and Computer Science, Royal Institute of Technology, Stockholm, Sweden
(2)  Dept. of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel
Abstract
Sorting permutations by transpositions is an important problem in genome rearrangements. A transposition is a rearrangement operation in which a segment is cut out of the permutation and pasted in a different location. The complexity of this problem is still open and it has been a ten-year-old open problem to improve the best known 1.5-approximation algorithm. In this paper we provide a 1.375-approximation algorithm for sorting by transpositions. The algorithm is based on a new upper bound on the diameter of 3-permutations. In addition, we present some new results regarding the transposition diameter: We improve the lower bound for the transposition diameter of the symmetric group, and determine the exact transposition diameter of 2-permutations and simple permutations.
Work done while at the Dept. of Computer Science and Applied Mathematics, Weizmann Institute of Science.

Contact Information Isaac Elias
Email: isaac@nada.kth.se

Contact Information Tzvika Hartman
Email: tzvi.hartman@weizmann.ac.il
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Referenced by
2 newer articles

  1. Alekseyev, Max A. (2008) Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes. Journal of Computational Biology 0(0)
    [CrossRef]
  2. Labarre, Anthony (2006) . IEEE/ACM Transactions on Computational Biology and Bioinformatics 3(4)
    [CrossRef]
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