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Book Chapter
A 1.375-Approximation Algorithm for Sorting by Transpositions
Book Series
Lecture Notes in Computer Science
Publisher
Springer Berlin / Heidelberg
ISSN
0302-9743 (Print) 1611-3349 (Online)
Volume
Volume 3692/2005
Book
Algorithms in Bioinformatics
DOI
10.1007/11557067
Copyright
2005
ISBN
978-3-540-29008-7
Category
1. Trasposition Model
DOI
10.1007/11557067_17
Pages
204-215
Subject Collection
Computer Science
SpringerLink Date
Friday, October 21, 2005
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1. Trasposition Model
A 1.375-Approximation Algorithm for Sorting by Transpositions
Isaac Elias
1
and Tzvika Hartman
2
(1)
Dept. of Numerical Analysis and Computer Science, Royal Institute of Technology, Stockholm, Sweden
(2)
Dept. of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel
Abstract
Sorting permutations by transpositions is an important problem in genome rearrangements. A transposition is a rearrangement operation in which a segment is cut out of the permutation and pasted in a different location. The complexity of this problem is still open and it has been a ten-year-old open problem to improve the best known 1.5-approximation algorithm. In this paper we provide a 1.375-approximation algorithm for sorting by transpositions. The algorithm is based on a new upper bound on the diameter of 3-permutations. In addition, we present some new results regarding the transposition diameter: We improve the lower bound for the transposition diameter of the symmetric group, and determine the exact transposition diameter of 2-permutations and simple permutations.
Work done while at the Dept. of Computer Science and Applied Mathematics, Weizmann Institute of Science.
Isaac
Elias
Email:
isaac@nada.kth.se
Tzvika
Hartman
Email:
tzvi.hartman@weizmann.ac.il
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Referenced by
2 newer articles
Alekseyev, Max A. (2008) Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes.
Journal of Computational Biology
0(0)
[CrossRef]
Labarre, Anthony (2006) .
IEEE/ACM Transactions on Computational Biology and Bioinformatics
3(4)
[CrossRef]
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