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The Longest Common Subsequence Problem A Finite Automata Approach

Bořivoj MelicharContact Information and Tomáš PolcarContact Information

(6)  Department of Computer Science and Engineering Faculty of Electrical Engineering, Czech Technical University, Karlovo nám. 13, 121 35 Prague 2, Czech Republic
Abstract
A new algorithm that creates a common subsequence automaton for a set of strings is presented. Moreover, it is shown that a longest common subsequence of two strings over a constant alphabet can be found in $$
\mathcal{O}\left( {\left| A \right|\left( {\left| {S_1 } \right| + \left| {S_2 } \right| + \sum _{\alpha  \in A} \left| {S_1 } \right|_\alpha  \left| {S_2 } \right|_\alpha  } \right)} \right)
$$ time, where |A| is the size of the alphabet, |S i | is the length of the input string i, and |S i |a is the number of occurrences of a ∈ A in S i .
This research has been partialy supported by the Ministry of Education, Youth, and Sports of the Czech Republic under research program No. J04/98:212300014 (Research in the area of information technologies and cummunications) and by Grant Agency of Czech Republic grant No. 201/01/1433.

Contact Information Bořivoj Melichar
Email: melichar@fel.cvut.cz

Contact Information Tomáš Polcar
Email: polcart@fel.cvut.cz
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